EvryRNA : IpiRId

Integrative piRNA Identification

Dataset Input Format

IpiRId allows two input data possibilities for both positive and negative sequences:

  • piRNABank format (including sequences and positions in the same file)
  • Fasta & Bed files
  • Fasta format
  • Bed format
chrX	12605394	12605417	dme_piR_004753	5	-
chr2R	10410943	10410965	dme_piR_018952	8	+ 


NB: In order to have more accurate predictions, positions of positive and negative sequences must be aligned onto:

  • Human hg38 reference genome
  • Mouse mm10 reference genome
  • Fly dm6 reference genome

Dataset Example files

Drosophila Melanogaster

For any questions, comments or suggestions about IpiRId, please feel free to contact: fariza.tahi@ibisc.univ-evry.fr